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Arakaki, Adrian K
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ResearcherID: C-6564-2008
URL: http://www.researcherid.com/rid/C-6564-2008
Subject: Biochemistry & Molecular Biology; Computer Science; Evolutionary Biology; Life Sciences & Biomedicine - Other; Medical Informatics
Keywords: enzyme prediction, eficaz, protein function prediction, fold evolution, cancer metabolomics, computational metabolomics, comet
My Institutions (more details)
Primary Institution:
Sub-org/Dept: Center for the Study of Systems Biology
Role:
Joint Affiliation:
Sub-org/Dept: Integrative BioSystems Institute, IBSI
Role:
Description:
 

Publications

My Publications (26)

 
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publication(s)  
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1. Title: A productive NADP(+) binding mode of ferredoxin-NADP(+) reductase revealed by protein engineering and crystallographic studies
Author(s): DENG, Z; ALIVERTI, A; ZANETTI, G; et al.
Source: NATURE STRUCTURAL BIOLOGY Volume: 6 Issue: 9 Pages: 847-853 Published: SEP 1999
Times Cited: 113
added
09-Dec-08
2. Title: Plant-type ferredoxin-NADP(+) reductases: A basal structural framework and a multiplicity of functions
Author(s): ARAKAKI, AK; CECCARELLI, EA; CARRILLO, N
Source: FASEB JOURNAL Volume: 11 Issue: 2 Pages: 133-140 Published: FEB 1997
Times Cited: 85
added
09-Dec-08
3. Title: EVOLUTIONARY RELATIONSHIPS AMONG EUBACTERIAL GROUPS AS INFERRED FROM GROEL (CHAPERONIN) SEQUENCE COMPARISONS
Author(s): VIALE, AM; ARAKAKI, AK; SONCINI, FC; et al.
Source: INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY Volume: 44 Issue: 3 Pages: 527-533 Published: JUL 1994
Times Cited: 81
added
09-Dec-08
4. Title: THE CHAPERONE CONNECTION TO THE ORIGINS OF THE EUKARYOTIC ORGANELLES
Author(s): VIALE, AM; ARAKAKI, AK
Source: FEBS LETTERS Volume: 341 Issue: 2-3 Pages: 146-151 Published: MAR 21 1994
Times Cited: 79
added
09-Dec-08
5. Title: On the origin and highly likely completeness of single-domain protein structures
Author(s): ZHANG, Y; HUBNER, IA; ARAKAKI, AK; et al.
Source: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA Volume: 103 Issue: 8 Pages: 2605-2610 Published: FEB 21 2006
Times Cited: 56
DOI: 10.1073/pnas.0509379103
added
09-Dec-08
6. Title: Multimeric threading-based prediction of protein-protein interactions on a genomic scale: Application to the Saccharomyces cerevisiae proteome
Author(s): LU, L; ARAKAKI, AK; LU, H; et al.
Source: GENOME RESEARCH Volume: 13 Issue: 6 Pages: 1146-1154 Published: JUN 2003
Times Cited: 54
DOI: 10.1101/gr.1145203
added
09-Dec-08
7. Title: TASSER: An automated method for the prediction of protein tertiary structures in CASP6
Author(s): ZHANG, Y; ARAKAKI, AK; SKOLNICK, JR
Source: PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS Volume: 61 Pages: 91-98 Published: 2005
Times Cited: 52
DOI: 10.1002/prot.20724
added
09-Dec-08
8. Title: Competition between C-terminal tyrosine and nicotinamide modulates pyridine nucleotide affinity and specificity in plant ferredoxin-NADP(+) reductase
Author(s): PIUBELLI, L; ALIVERTI, A; ARAKAKI, AK; et al.
Source: JOURNAL OF BIOLOGICAL CHEMISTRY Volume: 275 Issue: 14 Pages: 10472-10476 Published: APR 7 2000
Times Cited: 45
added
09-Dec-08
9. Title: Interaction of the targeting sequence of chloroplast precursors with Hsp70 molecular chaperones
Author(s): RIAL, DV; ARAKAKI, AK; CECCARELLI, EA
Source: EUROPEAN JOURNAL OF BIOCHEMISTRY Volume: 267 Issue: 20 Pages: 6239-6248 Published: OCT 2000
Times Cited: 40
added
09-Dec-08
10. Title: Functional plasticity and catalytic efficiency in plant and bacterial ferredoxin-NADP(H) reductases
Author(s): CECCARELLI, EA; ARAKAKI, AK; CORTEZ, N; et al.
Source: BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS Volume: 1698 Issue: 2 Pages: 155-165 Published: MAY 6 2004
Times Cited: 39
DOI: 10.1016/j.bbapap.2003.12.005
added
09-Dec-08
publication(s)  
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