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Zhou, Yaoqi
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ResearcherID: B-3284-2009
URL: http://www.researcherid.com/rid/B-3284-2009
Subject: Biophysics
Keywords: structural bioinformatics; protein structure prediction; protein-protein interactions; protein-ligand interactions; protein-dna interaction; bioinformatics; computational biology; computational biophysics; computer-aided drug design; protein design; protein folding; machine learning; data mining
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publication(s)  
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1. Title: Characterizing the Existing and Potential Structural Space of Proteins by Large-Scale Multiple Loop Permutations
Author(s): Dai, Liang; Zhou, Yaoqi
Source: Journal of Molecular Biology Volume: 408 Issue: 3 Pages: 585-595 Published: MAY 6 2011
Times Cited: 1
DOI: 10.1016/j.jmb.2011.02.056
added
12-Oct-11
2. Title: Improving protein fold recognition and template-based modeling by employing probabilistic-based matching between predicted one-dimensional structural properties of query and corresponding native properties of templates
Author(s): Yang, Yuedong; Faraggi, Eshel; Zhao, Huiying; et al.
Source: Bioinformatics Volume: 27 Issue: 15 Pages: 2076-2082 Published: AUG 1 2011
Times Cited: 2
DOI: 10.1093/bioinformatics/btr350
added
12-Oct-11
3. Title: In-silico prediction of disorder content using hybrid sequence representation
Author(s): Mizianty, Marcin J.; Zhang, Tuo; Xue, Bin; et al.
Source: Bmc Bioinformatics Volume: 12 Published: JUN 17 2011
Times Cited: 1
DOI: 10.1186/1471-2105-12-245
added
12-Oct-11
4. Title: Protein Side Chain Modeling with Orientation-Dependent Atomic Force Fields Derived by Series Expansions
Author(s): Liang, Shide; Zhou, Yaoqi; Grishin, Nick; et al.
Source: Journal of Computational Chemistry Volume: 32 Issue: 8 Pages: 1680-1686 Published: JUN 2011
Times Cited: 3
DOI: 10.1002/jcc.21747
added
12-Oct-11
5. Title: Structure-based prediction of RNA-binding domains and RNA-binding sites and application to structural genomics targets
Author(s): Zhao, Huiying; Yang, Yuedong; Zhou, Yaoqi
Source: Nucleic Acids Research Volume: 39 Issue: 8 Pages: 3017-3025 Published: APR 2011
Times Cited: 1
DOI: 10.1093/nar/gkq1266
added
12-Oct-11
6. Title: Trends in template/fragment-free protein structure prediction
Author(s): Zhou, Yaoqi; Duan, Yong; Yang, Yuedong; et al.
Source: Theoretical Chemistry Accounts Volume: 128 Issue: 1 Pages: 3-16 Published: JAN 2011
Times Cited: 1
DOI: 10.1007/s00214-010-0799-2
added
12-Oct-11
7. Title: Fluctuations of backbone torsion angles obtained from NMR-determined structures and their prediction.
Author(s): Zhang, Tuo; Faraggi, Eshel; Zhou, Yaoqi
Source: Proteins Volume: 78 Issue: 16 Pages: 3353-62 Published: Dec 2010
added
30-Nov-10
8. Title: Improving computational protein design by using structure-derived sequence profile
Author(s): Dai, LA; Yang, YD; Kim, HR; et al.
Source: Proteins-Structure Function and Bioinformatics Volume: 78 Issue: 10 Pages: 2338-2348 Published: 2010
Times Cited: 1
DOI: 10.1002/prot.22746
added
30-Nov-10
9. Title: Structure-based prediction of DNA-binding proteins by structural alignment and a volume-fraction corrected DFIRE-based energy function
Author(s): Zhao, HY; Yang, YD; Zhou, YQ
Source: Bioinformatics Volume: 26 Issue: 15 Pages: 1857-1863 Published: 2010
Times Cited: 3
DOI: 10.1093/bioinformatics/btq295
added
30-Nov-10
10. Title: An all-atom knowledge-based energy function for protein-DNA threading, docking decoy discrimination, and prediction of transcription-factor binding profiles
Author(s): XU, BS; YANG, YD; LIANG, HJ; et al.
Source: PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS Volume: 76 Issue: 3 Pages: 718-730 Published: 2009
Times Cited: 8
DOI: 10.1002/prot.22384
added
26-Aug-09
publication(s)  
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