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Wakefield, Matthew J
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ResearcherID: A-7795-2008
URL: http://www.researcherid.com/rid/A-7795-2008
Subject: Biochemistry & Molecular Biology; Genetics & Heredity; Mathematical & Computational Biology; Oncology; Research & Experimental Medicine
Keywords: comparative genomics; rna-seq; next generation sequencing; bioinformatics; computational biology
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Past Institutions: La Trobe University; The Australian National University (ANU)
 
 
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This list contains papers that I have authored.

   
publication(s)  
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1. Title: Differential Expression for RNA Sequencing (RNA-Seq) Data: Mapping, Summarization, Statistical Analysis, and Experimental Design
Author(s): Young, Matthew D.; McCarthy, Davis J.; Wakefield, Matthew J.; et al.
Source: Bioinformatics for High Throughput Sequencing Pages: 169-190 Published: 2012
DOI: 10.1007/978-1-4614-0782-9
added
05-Nov-11
2. Title: A second-generation anchored genetic linkage map of the tammar wallaby (Macropus eugenii)
Author(s): Wang, Chenwei; Webley, Lee; Wei, Ke-Jun; et al.
Source: BMC genetics Volume: 12 Pages: 72 Published: 2011 Aug
added
18-Oct-11
3. Title: ChIP-seq analysis reveals distinct H3K27me3 profiles that correlate with transcriptional activity
Author(s): Young, Matthew D.; Willson, Tracy A.; Wakefield, Matthew J.; et al.
Source: Nucleic Acids Research Volume: 39 Issue: 17 Pages: 7415-7427 Published: 2011
added
18-Oct-11
4. Title: Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development.
Author(s): Renfree, M. B.; Papenfuss, A. T.; Deakin, J. E.; et al.
Source: Genome Biol Volume: 12 Issue: 8 Pages: R81 Published: 2011
DOI: gb-2011-12-8-r81 [pii]10.1186/gb-2011-12-8-r81 / Author-provided URL : http://www.ncbi.nlm.nih.gov/pubmed/21854559
added
23-Oct-11
5. Title: Gene ontology analysis for RNA-seq: accounting for selection bias
Author(s): Young, M. D.; Wakefield, M. J.; Smyth, G. K.; et al.
Source: Genome Biology Volume: 11 Issue: 2 Published: 2010
Times Cited: 12
DOI: R1410.1186/gb-2010-11-2-r14
added
04-May-10
6. Title: Insight into the evolution of gene regulation networks from the opossum genome
Author(s): Wakefield, Matthew J.; Papenfuss, Anthony T.
Source: Marsupial Genetics and Genomics  Published: 2010
DOI: 10.1007/978-90-481-9023-2_7
added
04-May-10
7. Title: Marsupial Sequencing Projects and Bioinformatics Challenges
Author(s): Papenfuss, Anthony T.; Hsu, Arthur; Wakefield, Matthew J.
Source: Marsupial Genetics and Genomics Published: 2010
DOI: 10.1007/978-90-481-9023-2_6
added
04-May-10
8. Title: Isolation and characterization of 10 MHC Class I-associated microsatellite loci in tammar wallaby (Macropus eugenii)
Author(s): CHENG, YY; WAKEFIELD, M; SIDDLE, HV; et al.
Source: MOLECULAR ECOLOGY RESOURCES Volume: 9 Issue: 1 Pages: 346-349 Published: 2009
Times Cited: 5
DOI: 10.1111/j.1755-0998.2008.02401.x
added
22-Jun-09
9. Title: Transcript length bias in RNA-seq data confounds systems biology
Author(s): OSHLACK, A; WAKEFIELD, MJ
Source: BIOLOGY DIRECT Volume: 4 Published: APR 16 2009
Times Cited: 44
DOI: 10.1186/1745-6150-4-14
added
22-Jun-09
10. Title: Cone visual pigments of monotremes: Filling the phylogenetic gap
Author(s): WAKEFIELD, MI; ANDERSON, M; CHANG, E; et al.
Source: VISUAL NEUROSCIENCE Volume: 25 Issue: 3 Pages: 257-264 Published: MAY-JUN 2008
Times Cited: 16
DOI: 10.1017/S0952523808080255
added
28-Oct-08
publication(s)  
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