Title: Markers of adenocarcinoma characteristic of the site of origin: Development of a diagnostic algorithm Author(s): DENNIS, JL; HVIDSTEN, TR; WIT, EC; et al. Source: CLINICAL CANCER RESEARCH Volume: 11 Issue: 10 Pages: 3766-3772 Published: MAY 15 2005 Times Cited: 98 DOI: 10.1158/1078-0432.CCR-04-2236
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Title: Learning rule-based models of biological process from gene expression time profiles using gene ontology Author(s): HVIDSTEN, TR; LAEGREID, A; KOMOROWSKI, J Source: BIOINFORMATICS Volume: 19 Issue: 9 Pages: 1116-1123 Published: 2003 Times Cited: 52 DOI: 10.1093/bioinformatics/btg047
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Title: Predicting gene ontology biological process from temporal gene expression patterns Author(s): LAEGREID, A; HVIDSTEN, TR; MIDELFART, H; et al. Source: GENOME RESEARCH Volume: 13 Issue: 5 Pages: 965-979 Published: MAY 2003 Times Cited: 52 DOI: 10.1101/gr.1144503
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Title: Discovering regulatory binding-site modules using rule-based learning Author(s): HVIDSTEN, TR; WILCZYNSKI, B; KRYSHTAFOVYCH, A; et al. Source: GENOME RESEARCH Volume: 15 Issue: 6 Pages: 856-866 Published: JUN 2005 Times Cited: 21 DOI: 10.1101/gr.3760605
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Title: A novel approach to fold recognition using sequence-derived properties from sets of structurally similar local fragments of proteins Author(s): HVIDSTEN, TR; KRYSHTAFOVYCH, A; KOMOROWSKI, J; et al. Source: BIOINFORMATICS Volume: 19 Pages: II81-II91 Published: 2003 Times Cited: 19 DOI: 10.1093/bioinformatics/btg1064
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Title: Interaction Model Based on Local Protein Substructures Generalizes to the Entire Structural Enzyme-Ligand Space Author(s): STROEMBERGSSON, H; DANILUK, P; KRYSHTAFOVYCH, A; et al. Source: JOURNAL OF CHEMICAL INFORMATION AND MODELING Volume: 48 Issue: 11 Pages: 2278-2288 Published: 2008 Times Cited: 18 DOI: 10.1021/ci800200e
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Title: Generalized modeling of enzyme-ligand interactions using proteochemometrics and local protein substructures Author(s): STROMBERGSSON, H; KRYSHTAFOVYCH, A; PRUSIS, P; et al. Source: PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS Volume: 65 Issue: 3 Pages: 568-579 Published: NOV 15 2006 Times Cited: 14 DOI: 10.1002/prot.21163
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Title: A segmental maximum a posteriori approach to genome-wide copy number profiling Author(s): ANDERSSON, R; BRUDER, CEG; PIOTROWSKI, A; et al. Source: BIOINFORMATICS Volume: 24 Issue: 6 Pages: 751-758 Published: 2008 Times Cited: 13 DOI: 10.1093/bioinformatics/btn003
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Title: Using multi-data hidden Markov models trained on local neighborhoods of protein structure to predict residue-residue contacts Author(s): BJORKHOLM, P; DANILUK, P; KRYSHTAFOVYCH, A; et al. Source: BIOINFORMATICS Volume: 25 Issue: 10 Pages: 1264-1270 Published: 2009 Times Cited: 9 DOI: 10.1093/bioinformatics/btp149
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Title: Local descriptors of protein structure: A systematic analysis of the sequence-structure relationship in proteins using short- and long-range interactions Author(s): HVIDSTEN, TR; KRYSHTAFOVYCH, A; FIDELIS, K Source: PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS Volume: 75 Issue: 4 Pages: 870-884 Published: 2009 Times Cited: 9 DOI: 10.1002/prot.22296
