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NIKAIDO, Itoshi
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ResearcherID: K-2058-2014
URL: http://www.researcherid.com/rid/K-2058-2014
Keywords: bioinformatics; genome
ORCID: http://orcid.org/0000-0002-7261-2570
My Institutions (more details)
Primary Institution:
Sub-org/Dept: Bioinformatics Research Unit; Advanced Center for Computing and Communication
Role:
My URLs: http://hackingisbelieving.org/
http://bit.riken.jp/
 
 

This list contains papers that I have authored.

publication(s)  
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1. Title: An application of MeSH enrichment analysis in livestock
Author(s): Morota, G.; Penagaricano, F.; Petersen, J. L.; et al.
Source: Animal Genetics Volume: 46 Issue: 4 Pages: 381-387 Published: AUG 2015
Times Cited: 4
DOI: 10.1111/age.12307
added
05-Nov-15
2. Title: MeSH ORA framework: R/Bioconductor packages to support MeSH over-representation analysis
Author(s): Tsuyuzaki, Koki; Morota, Gota; Ishii, Manabu; et al.
Source: Bmc Bioinformatics Volume: 16 Published: FEB 15 2015
Times Cited: 6
DOI: 10.1186/s12859-015-0453-z
added
05-Nov-15
3. Title: An automated system for high-throughput single cell-based breeding
Author(s): Yoshimoto, Nobuo; Kida, Akiko; Jie, Xu; et al.
Source: Scientific Reports Volume: 3 Published: FEB 1 2013
Times Cited: 22
DOI: 10.1038/srep01191
added
04-Sep-14
4. Title: Context-Dependent Wiring of Sox2 Regulatory Networks for Self-Renewal of Embryonic and Trophoblast Stem Cells
Author(s): Adachi, Kenjiro; Nikaido, Itoshi; Ohta, Hiroshi; et al.
Source: Molecular Cell Volume: 52 Issue: 3 Pages: 380-392 Published: NOV 7 2013
Times Cited: 35
DOI: 10.1016/j.molcel.2013.09.002
added
04-Sep-14
5. Title: Quartz-Seq: a highly reproducible and sensitive single-cell RNA sequencing method, reveals non-genetic gene-expression heterogeneity
Author(s): Sasagawa, Yohei; Nikaido, Itoshi; Hayashi, Tetsutaro; et al.
Source: Genome Biology Volume: 14 Issue: 4 Published: 2013
Times Cited: 73
DOI: 10.1186/gb-2013-14-4-r31
added
04-Sep-14
6. Title: Transcriptome Tomography for Brain Analysis in the Web-Accessible Anatomical Space
Author(s): Okamura-Oho, Yuko; Shimokawa, Kazuro; Takemoto, Satoko; et al.
Source: Plos One Volume: 7 Issue: 9 Published: SEP 19 2012
Times Cited: 4
DOI: 10.1371/journal.pone.0045373
added
04-Sep-14
7. Title: Quantitative Expression Profile of Distinct Functional Regions in the Adult Mouse Brain
Author(s): Kasukawa, Takeya; Masumoto, Koh-hei; Nikaido, Itoshi; et al.
Source: Plos One Volume: 6 Issue: 8 Published: AUG 12 2011
Times Cited: 21
DOI: 10.1371/journal.pone.0023228
added
04-Sep-14
8. Title: Id4, a New Candidate Gene for Senile Osteoporosis, Acts as a Molecular Switch Promoting Osteoblast Differentiation
Author(s): Tokuzawa, Yoshimi; Yagi, Ken; Yamashita, Yzumi; et al.
Source: Plos Genetics Volume: 6 Issue: 7 Published: JUL 2010
Times Cited: 33
DOI: 10.1371/journal.pgen.1001019
added
04-Sep-14
9. Title: Integration of exogenous DNA into mouse embryonic stem cell chromosomes shows preference into genes and frequent modification at junctions
Author(s): Suzuki, Keiichiro; Ohbayashi, Fumi; Nikaido, Itoshi; et al.
Source: Chromosome Research Volume: 18 Issue: 2 Pages: 191-201 Published: FEB 2010
Times Cited: 2
DOI: 10.1007/s10577-010-9111-5
added
04-Sep-14
10. Title: Identification of novel PPAR gamma target genes by integrated analysis of ChIP-on-chip and microarray expression data during adipocyte differentiation
Author(s): Nakachi, Yutaka; Yagi, Ken; Nikaido, Itoshi; et al.
Source: Biochemical and Biophysical Research Communications Volume: 372 Issue: 2 Pages: 362-366 Published: JUL 25 2008
Times Cited: 28
DOI: 10.1016/j.bbrc.2008.05.037
added
04-Sep-14
publication(s)  
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