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Lister, Ryan
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ResearcherID: B-5168-2012
URL: http://www.researcherid.com/rid/B-5168-2012
Subject: Biochemistry & Molecular Biology
Keywords: genomics, epigenetics, dna methylation, histone modification, next generation sequencing
ORCID: http://orcid.org/0000-0001-6637-7239
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This list contains papers that I have authored.

publication(s)  
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1.  Title: A modular dCas9-SunTag DNMT3A epigenome editing system overcomes pervasive off-target activity of direct fusion dCas9-DNMT3A constructs
 Author(s): Christian Pflueger; Dennis Tan; Tessa Swain; et al.
 DOI: 10.1101/266130 /  Author-provided URL : https://doi.org/10.1101/266130
added
03-May-18
2.  Title: Approaches for the~Analysis and Interpretation of Whole Genome Bisulfite Sequencing Data
 Author(s): Tim Stuart; Sam Buckberry; Ryan Lister
 Source: Methods in Molecular Biology Pages: 299--310 Published: 2018
 DOI: 10.1007/978-1-4939-7774-1_17
added
03-May-18
3.  Title: Generation of Whole Genome Bisulfite Sequencing Libraries for Comprehensive DNA Methylome Analysis
 Author(s): Dulce B. Vargas-Landin; Jahnvi Pflüger; Ryan Lister
 Source: Methods in Molecular Biology Pages: 291--298 Published: 2018
 DOI: 10.1007/978-1-4939-7774-1_16
added
03-May-18
4.  Title: Recurrent acquisition of cytosine methyltransferases into eukaryotic retrotransposons
 Author(s): Alex de Mendoza; Amandine Bonnet; Dulce B. Vargas-Landin; et al.
 Source: Nature Communications Volume: 9 Issue: 1 Published: 2018
 Times Cited: 1
 DOI: 10.1038/s41467-018-03724-9
added
03-May-18
5.  Title: Cell Type of Origin Dictates the Route to Pluripotency
 Author(s): Christian M. Nefzger; Fernando J. Rossello; Joseph Chen; et al.
 Source: Cell Reports Volume: 21 Issue: 10 Pages: 2649--2660 Published: 2017
 Times Cited: 0
 DOI: 10.1016/j.celrep.2017.11.029
added
03-May-18
6.  Title: Comprehensive characterization of distinct states of human naive pluripotency generated by reprogramming
 Author(s): Xiaodong Liu; Christian M Nefzger; Fernando J Rossello; et al.
 Source: Nature Methods Volume: 14 Issue: 11 Pages: 1055--1062 Published: 2017
 Times Cited: 6
 DOI: 10.1038/NMETH.4436
added
03-May-18
7.  Title: DNA methylation and the preservation of cell identity
 Author(s): Ozren Bogdanovic; Ryan Lister
 Source: Current Opinion in Genetics & Development Volume: 46 Pages: 9--14 Published: 2017
 Times Cited: 3
 DOI: 10.1016/j.gde.2017.06.007
added
03-May-18
8.  Title: Dynamic and rapid changes in the transcriptome and epigenome during germination and in developing rice (Oryza sativa) coleoptiles under anoxia and re-oxygenation
 Author(s): Reena Narsai; David Secco; Matthew D. Schultz; et al.
 Source: The Plant Journal Volume: 89 Issue: 4 Pages: 805--824 Published: 2017
 Times Cited: 3
 DOI: 10.1111/tpj.13418
added
03-May-18
9.  Title: Epigenomic Landscapes of hESC-Derived Neural Rosettes: Modeling Neural Tube Formation and Diseases
 Author(s): Cristina Valensisi; Colin Andrus; Sam Buckberry; et al.
 Source: Cell Reports Volume: 20 Issue: 6 Pages: 1448--1462 Published: 2017
 Times Cited: 0
 DOI: 10.1016/j.celrep.2017.07.036
added
03-May-18
10.  Title: Extensive transcriptomic and epigenomic remodelling occurs during Arabidopsis thaliana germination
 Author(s): Reena Narsai; Quentin Gouil; David Secco; et al.
 Source: Genome Biology Volume: 18 Issue: 1 Published: 2017
 Times Cited: 3
 DOI: 10.1186/s13059-017-1302-3
added
03-May-18
publication(s)  
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