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Naldi, Aurélien
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ResearcherID: B-5401-2008
URL: http://www.researcherid.com/rid/B-5401-2008
Subject: Cell Biology; Computer Science; Immunology; Mathematical & Computational Biology
ORCID: http://orcid.org/0000-0002-6495-2655
My Institutions (more details)
Primary Institution:
Sub-org/Dept: IBENS
Role:
Past Institutions: Universite de Montpellier; UNIL - University of Lausanne; TAGC, INSERM U928
My URLs: http://aurelien.naldi.info/
 
 

This list contains papers that I have authored.

publication(s)  
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1.  Title: Reconstruction and signal propagation analysis of the Syk signaling network in breast cancer cells
 Author(s): Naldi, A.; Larive, R. M.; Czerwinska, U.; et al.
 Source: PLoS Comput Biol Volume: 13 Issue: 3 Pages: e1005432 Published: 2017
 DOI: 10.1371/journal.pcbi.1005432 /  Author-provided URL : https://www.ncbi.nlm.nih.gov/pubmed/28306714
added
21-Jun-17
2.  Title: The combination of the functionalities of feedback circuits is determinant for the attractors' number and size in pathway-like Boolean networks
 Author(s): Azpeitia, E.; Muñoz, S.; González-Tokman, D.; et al.
 Source: Sci Rep Volume: 7 Pages: 42023 Published: 2017
 DOI: 10.1038/srep42023 /  Author-provided URL : https://www.ncbi.nlm.nih.gov/pubmed/28186191
added
21-Jun-17
3.  Title: Geometric analysis of pathways dynamics: Application to versatility of TGF-β receptors
 Author(s): Samal, S. S.; Naldi, A.; Grigoriev, D.; et al.
 Source: Biosystems Volume: 149 Pages: 3-14 Published: 2016
 DOI: 10.1016/j.biosystems.2016.07.004 /  Author-provided URL : https://www.ncbi.nlm.nih.gov/pubmed/27452668
added
21-Jun-17
4.  Title: Cooperative development of logical modelling standards and tools with CoLoMoTo
 Author(s): Naldi, Aurelien; Monteiro, Pedro T.; Muessel, Christoph; et al.
 Source: Bioinformatics Volume: 31 Issue: 7 Pages: 1154-1159 Published: APR 1 2015
 Times Cited: 10
 DOI: 10.1093/bioinformatics/btv013
added
23-Jul-15
5.  Title: The Systems Biology Markup Language (SBML) Level 3 Package: Qualitative Models, Version 1, Release 1.
 Author(s): Chaouiya, Claudine; Keating, Sarah M; Berenguier, Duncan; et al.
 Source: Journal of integrative bioinformatics Volume: 12 Issue: 2 Pages: 270 Published: 2015
 DOI: 10.2390/biecoll-jib-2015-270
added
15-Dec-15
6.  Title: Genome-Wide Analysis of {SREBP}1 Activity around the Clock Reveals Its Combined Dependency on Nutrient and Circadian Signals
 Author(s): Federica Gilardi; Eugenia Migliavacca; Aur{\'{e}}lien Naldi; et al.
 Source: {PLoS} Genetics Volume: 10 Issue: 3 Pages: e1004155 Published: 2014
 Times Cited: 18
 DOI: 10.1371/journal.pgen.1004155
added
26-Nov-14
7.  Title: Model checking to assess T-helper cell plasticity.
 Author(s): Abou-Jaoude, Wassim; Monteiro, Pedro T; Naldi, Aurelien; et al.
 Source: Frontiers in bioengineering and biotechnology Volume: 2 Pages: 86 Published: 2014
 DOI: 10.3389/fbioe.2014.00086
added
03-Aug-15
8.  Title: Dynamical modeling and analysis of large cellular regulatory networks
 Author(s): D. Be{\'}renguier; C. Chaouiya; P. T. Monteiro; et al.
 Source: Chaos Volume: 23 Issue: 2 Pages: 025114 Published: 2013
 Times Cited: 18
 DOI: 10.1063/1.4809783
added
26-Nov-14
9.  Title: On Circuit Functionality in Boolean Networks
 Author(s): Jean-Paul Comet; Mathilde Noual; Adrien Richard; et al.
 Source: Bull Math Biol Volume: 75 Issue: 6 Pages: 906--919 Published: 2013
 Times Cited: 9
 DOI: 10.1007/s11538-013-9829-2
added
26-Nov-14
10.  Title: {SBML} qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools
 Author(s): Claudine Chaouiya; Duncan B{\'{e}}renguier; Sarah M Keating; et al.
 Source: {BMC} Syst Biol Volume: 7 Issue: 1 Pages: 135 Published: 2013
 Times Cited: 38
 DOI: 10.1186/1752-0509-7-135
added
26-Nov-14
publication(s)  
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