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Naldi, Aurélien
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ResearcherID: B-5401-2008
URL: http://www.researcherid.com/rid/B-5401-2008
ORCID: http://orcid.org/0000-0002-6495-2655
My Institutions (more details)
Primary Institution:
Sub-org/Dept: DIMNP
Role:
Past Institutions: UNIL - University of Lausanne; TAGC, INSERM U928
My URLs: http://aurelien.naldi.info/
 
 

This list contains papers that I have authored.

publication(s)  
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1.  Title: Cooperative development of logical modelling standards and tools with CoLoMoTo
 Author(s): Naldi, Aurelien; Monteiro, Pedro T.; Muessel, Christoph; et al.
 Source: Bioinformatics Volume: 31 Issue: 7 Pages: 1154-1159 Published: APR 1 2015
 Times Cited: 6
 DOI: 10.1093/bioinformatics/btv013
added
23-Jul-15
2.  Title: The Systems Biology Markup Language (SBML) Level 3 Package: Qualitative Models, Version 1, Release 1.
 Author(s): Chaouiya, Claudine; Keating, Sarah M; Berenguier, Duncan; et al.
 Source: Journal of integrative bioinformatics Volume: 12 Issue: 2 Pages: 270 Published: 2015
 DOI: 10.2390/biecoll-jib-2015-270
added
15-Dec-15
3.  Title: Genome-Wide Analysis of {SREBP}1 Activity around the Clock Reveals Its Combined Dependency on Nutrient and Circadian Signals
 Author(s): Federica Gilardi; Eugenia Migliavacca; Aur{\'{e}}lien Naldi; et al.
 Source: {PLoS} Genetics Volume: 10 Issue: 3 Pages: e1004155 Published: 2014
 Times Cited: 16
 DOI: 10.1371/journal.pgen.1004155
added
26-Nov-14
4.  Title: Model checking to assess T-helper cell plasticity.
 Author(s): Abou-Jaoude, Wassim; Monteiro, Pedro T; Naldi, Aurelien; et al.
 Source: Frontiers in bioengineering and biotechnology Volume: 2 Pages: 86 Published: 2014
 DOI: 10.3389/fbioe.2014.00086
added
03-Aug-15
5.  Title: Dynamical modeling and analysis of large cellular regulatory networks
 Author(s): D. Be{\'}renguier; C. Chaouiya; P. T. Monteiro; et al.
 Source: Chaos Volume: 23 Issue: 2 Pages: 025114 Published: 2013
 Times Cited: 16
 DOI: 10.1063/1.4809783
added
26-Nov-14
6.  Title: On Circuit Functionality in Boolean Networks
 Author(s): Jean-Paul Comet; Mathilde Noual; Adrien Richard; et al.
 Source: Bull Math Biol Volume: 75 Issue: 6 Pages: 906--919 Published: 2013
 Times Cited: 9
 DOI: 10.1007/s11538-013-9829-2
added
26-Nov-14
7.  Title: {SBML} qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools
 Author(s): Claudine Chaouiya; Duncan B{\'{e}}renguier; Sarah M Keating; et al.
 Source: {BMC} Syst Biol Volume: 7 Issue: 1 Pages: 135 Published: 2013
 Times Cited: 33
 DOI: 10.1186/1752-0509-7-135
added
26-Nov-14
8.  Title: Efficient Handling of Large Signalling-Regulatory Networks by Focusing on Their Core Control
 Author(s): Aur{\'{e}}lien Naldi; Pedro T. Monteiro; Claudine Chaouiya
 Source: Computational Methods in Systems Biology Pages: 288--306 Published: 2012
 DOI: 10.1007/978-3-642-33636-2_17
added
26-Nov-14
9.  Title: Dynamically consistent reduction of logical regulatory graphs
 Author(s): Aur{\'{e}}lien Naldi; Elisabeth Remy; Denis Thieffry; et al.
 Source: Theoretical Computer Science Volume: 412 Issue: 21 Pages: 2207--2218 Published: 2011
 Times Cited: 34
 DOI: 10.1016/j.tcs.2010.10.021
added
26-Nov-14
10.  Title: Logical Modelling of Gene Regulatory Networks with {GINsim}
 Author(s): Claudine Chaouiya; Aur{\'{e}}lien Naldi; Denis Thieffry
 Source: Methods in Molecular Biology Pages: 463--479 Published: 2011
 Times Cited: 32
 DOI: 10.1007/978-1-61779-361-5_23
added
26-Nov-14
publication(s)  
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