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Ding, Feng
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ResearcherID: G-6029-2011
URL: http://www.researcherid.com/rid/G-6029-2011
Subject: Biochemistry & Molecular Biology; Biophysics; Physics
Keywords: protein folding; protein misfolding and aggregation; protein design; small molecule docking; rna folding
ORCID: http://orcid.org/0000-0003-1850-6336
My Institutions (more details)
Primary Institution:
Sub-org/Dept: Department of Physics and Astronomy
Role:
Joint Affiliation:
Sub-org/Dept: Department of Biochemistry and Biophysics
Role:
My URLs: http://dlab.clemson.edu
 
 

This list contains papers that I have authored.

publication(s)  
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1.  Title: Topological determinants of protein folding
 Author(s): Dokholyan, NV; Li, L; Ding, F; et al.
 Source: Proceedings of the National Academy of Sciences of the United States of America Volume: 99 Issue: 13 Pages: 8637-8641 Published: JUN 25 2002
 Times Cited: 192
 DOI: 10.1073/pnas.122076099
added
12-Nov-11
2.  Title: Community-wide assessment of GPCR structure modelling and ligand docking: GPCR Dock 2008
 Author(s): Michino, M.; Abola, E.; Brooks, C. L.; et al.
 Source: Nature Reviews Drug Discovery Volume: 8 Issue: 6 Pages: 455-463 Published: 2009
 Times Cited: 176
 DOI: 10.1038/nrd2877
added
07-Jan-16
3.  Title: Eris: an automated estimator of protein stability
 Author(s): Yin, Shuangye; Ding, Feng; Dokholyan, Nikolay V.
 Source: Nature Methods Volume: 4 Issue: 6 Pages: 466-467 Published: JUN 2007
 Times Cited: 172
 DOI: 10.1038/nmeth0607-466
added
12-Nov-11
4.  Title: Ab initio RNA folding by discrete molecular dynamics: From structure prediction to folding mechanisms
 Author(s): Ding, Feng; Sharma, Shantanu; Chalasani, Poornima; et al.
 Source: Rna-a Publication of the Rna Society Volume: 14 Issue: 6 Pages: 1164-1173 Published: JUN 2008
 Times Cited: 141
 DOI: 10.1261/rna.894608
added
12-Nov-11
5.  Title: Mechanism for the alpha-helix to beta-hairpin transition
 Author(s): Ding, F; Borreguero, JM; Buldyrey, SV; et al.
 Source: Proteins-Structure Function and Genetics Volume: 53 Issue: 2 Pages: 220-228 Published: NOV 1 2003
 Times Cited: 138
 DOI: 10.1002/prot.10468
added
12-Nov-11
6.  Title: Molecular dynamics simulation of amyloid beta dimer formation
 Author(s): Urbanc, B; Cruz, L; Ding, F; et al.
 Source: Biophysical Journal Volume: 87 Issue: 4 Pages: 2310-2321 Published: OCT 2004
 Times Cited: 134
 DOI: 10.1529/biophysj.104.040980
added
12-Nov-11
7.  Title: Ab initio folding of proteins with all-atom discrete molecular dynamics
 Author(s): Ding, Feng; Tsao, Douglas; Nie, Huifen; et al.
 Source: Structure Volume: 16 Issue: 7 Pages: 1010-1018 Published: JUL 2008
 Times Cited: 124
 DOI: 10.1016/j.str.2008.03.013
added
12-Nov-11
8.  Title: Molecular dynamics simulation of the SH3 domain aggregation suggests a generic amyloidogenesis mechanism
 Author(s): Ding, F; Dokholyan, NV; Buldyrev, SV; et al.
 Source: Journal of Molecular Biology Volume: 324 Issue: 4 Pages: 851-857 Published: DEC 6 2002
 Times Cited: 122
 DOI: 10.1016/S0022-2836(02)01112-9
added
12-Nov-11
9.  Title: Emergence of protein fold families through rational design
 Author(s): Ding, Feng; Dokholyan, Nikolay V.
 Source: Plos Computational Biology Volume: 2 Issue: 7 Pages: 725-733 Published: JUL 2006
 Times Cited: 114
 DOI: 10.1371/journal.pcbi.0020085
added
12-Nov-11
10.  Title: Folding Trp-cage to NMR resolution native structure using a coarse-grained protein model
 Author(s): Ding, F; Buldyrev, SV; Dokholyan, NV
 Source: Biophysical Journal Volume: 88 Issue: 1 Pages: 147-155 Published: JAN 2005
 Times Cited: 102
 DOI: 10.1529/biophysj.104.046375
added
12-Nov-11
publication(s)  
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