This list contains papers that I find interesting.
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1.
Title: Alignment-free microbial phylogenomics under scenarios of sequence divergence, genome rearrangement and lateral genetic transfer Author(s): Bernard, Guillaume; Chan, Cheong Xin; Ragan, Mark A. Source: Scientific Reports Volume: 6 Published: JUL 1 2016 Times Cited: 4 DOI: 10.1038/srep28970
added
17-Nov-16
2.
Title: PhySortR: a fast, flexible tool for sorting phylogenetic trees in R Author(s): Stephens, Timothy G.; Bhattacharya, Debashish; Ragan, Mark A.; et al. Source: Peerj Volume: 4 Published: MAY 12 2016 Times Cited: 2 DOI: 10.7717/peerj.2038
added
17-Nov-16
3.
Title: Recapitulating phylogenies using k-mers: from trees to networks. Author(s): Bernard, Guillaume; Ragan, Mark A; Chan, Cheong Xin Source: F1000Research Volume: 5 Pages: 2789 Published: 2016 DOI: 10.12688/f1000research.10225.2
added
22-Feb-17
4.
Title: The transcriptomic response of the coral Acropora digitifera to a competent Symbiodinium strain: the symbiosome as an arrested early phagosome Author(s): Mohamed, A. R.; Cumbo, V.; Harii, S.; et al. Source: Molecular Ecology Volume: 25 Issue: 13 Pages: 3127-3141 Published: JUL 2016 Times Cited: 5 DOI: 10.1111/mec.13659
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17-Nov-16
5.
Title: A new species of Burkholderia isolated from sugarcane roots promotes plant growth Author(s): Paungfoo-Lonhienne, Chanyarat; Lonhienne, Thierry G. A.; Yeoh, Yun Kit; et al. Source: Microbial Biotechnology Volume: 7 Issue: 2 Pages: 142-154 Published: MAR 2014 Times Cited: 18 DOI: 10.1111/1751-7915.12105
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19-Aug-14
6.
Title: Inferring phylogenies of evolving sequences without multiple sequence alignment Author(s): Chan, Cheong Xin; Bernard, Guillaume; Poirion, Olivier; et al. Source: Scientific Reports Volume: 4 Published: SEP 30 2014 Times Cited: 15 DOI: 10.1038/srep06504
added
28-Oct-14
7.
Title: Molecular phylogenetics before sequences Oligonucleotide catalogs as k-mer spectra Author(s): Ragan, Mark A.; Bernard, Guillaume; Chan, Cheong Xin Source: Rna Biology Volume: 11 Issue: 3 Pages: 176-185 Published: MAR 1 2014 Times Cited: 4 DOI: 10.4161/rna.27505
added
19-Aug-14
8.
Title: Biological Intuition in Alignment-Free Methods: Response to Posada Author(s): Ragan, Mark A.; Chan, Cheong Xin Source: Journal of Molecular Evolution Volume: 77 Issue: 1-2 Pages: 1-2 Published: AUG 2013 Times Cited: 6 DOI: 10.1007/s00239-013-9573-0
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21-Oct-13
9.
Title: Clustering evolving proteins into homologous families Author(s): Chan, Cheong Xin; Mahbob, Maisarah; Ragan, Mark A. Source: Bmc Bioinformatics Volume: 14 Published: APR 8 2013 Times Cited: 4 DOI: 10.1186/1471-2105-14-120
added
21-Oct-13
10.
Title: Evidence for Widespread Exonic Small RNAs in the Glaucophyte Alga Cyanophora paradoxa Author(s): Gross, Jeferson; Wajid, Sana; Price, Dana C.; et al. Source: Plos One Volume: 8 Issue: 7 Published: JUL 3 2013 Times Cited: 3 DOI: 10.1371/journal.pone.0067669
