This list contains papers that I find interesting.
publication(s)
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1.
Title: Alignment-free inference of hierarchical and reticulate phylogenomic relationships Author(s): Bernard, Guillaume; Chan, Cheong Xin; Chan, Yao-Ban; et al. Source: Briefings in bioinformatics Published: 2017-Jun-30 DOI: 10.1093/bib/bbx067
added
12-Sep-17
2.
Title: Insights into the red algae and eukaryotic evolution from the genome of Porphyra umbilicalis (Bangiophyceae, Rhodophyta) Author(s): Brawley, Susan H.; Blouin, Nicolas A.; Ficko-Blean, Elizabeth; et al. Source: Proceedings of the National Academy of Sciences of the United States of America Volume: 114 Issue: 31 Pages: E6361-E6370 Published: 2017 Times Cited: 3 DOI: 10.1073/pnas.1703088114
added
12-Sep-17
3.
Title: Scaling Up the Phylogenetic Detection of Lateral Gene Transfer Events Author(s): Chan, Cheong Xin; Beiko, Robert G.; Ragan, Mark A. Source: Methods in molecular biology (Clifton, N.J.) Volume: 1525 Pages: 421-432 Published: 2017
added
12-Sep-17
4.
Title: The Algal Revolution Author(s): Brodie, Juliet; Chan, Cheong Xin; De Clerck, Olivier; et al. Source: Trends in Plant Science Volume: 22 Issue: 8 Pages: 726-738 Published: 2017 Times Cited: 1 DOI: 10.1016/j.tplants.2017.05.005
added
12-Sep-17
5.
Title: Alignment-free microbial phylogenomics under scenarios of sequence divergence, genome rearrangement and lateral genetic transfer Author(s): Bernard, Guillaume; Chan, Cheong Xin; Ragan, Mark A. Source: Scientific Reports Volume: 6 Published: JUL 1 2016 Times Cited: 7 DOI: 10.1038/srep28970
added
17-Nov-16
6.
Title: PhySortR: a fast, flexible tool for sorting phylogenetic trees in R Author(s): Stephens, Timothy G.; Bhattacharya, Debashish; Ragan, Mark A.; et al. Source: Peerj Volume: 4 Published: MAY 12 2016 Times Cited: 5 DOI: 10.7717/peerj.2038
added
17-Nov-16
7.
Title: Recapitulating phylogenies using k-mers: from trees to networks. Author(s): Bernard, Guillaume; Ragan, Mark A; Chan, Cheong Xin Source: F1000Research Volume: 5 Pages: 2789 Published: 2016 DOI: 10.12688/f1000research.10225.2
added
22-Feb-17
8.
Title: The transcriptomic response of the coral Acropora digitifera to a competent Symbiodinium strain: the symbiosome as an arrested early phagosome Author(s): Mohamed, A. R.; Cumbo, V.; Harii, S.; et al. Source: Molecular Ecology Volume: 25 Issue: 13 Pages: 3127-3141 Published: JUL 2016 Times Cited: 13 DOI: 10.1111/mec.13659
added
17-Nov-16
9.
Title: A new species of Burkholderia isolated from sugarcane roots promotes plant growth Author(s): Paungfoo-Lonhienne, Chanyarat; Lonhienne, Thierry G. A.; Yeoh, Yun Kit; et al. Source: Microbial Biotechnology Volume: 7 Issue: 2 Pages: 142-154 Published: MAR 2014 Times Cited: 23 DOI: 10.1111/1751-7915.12105
added
19-Aug-14
10.
Title: Inferring phylogenies of evolving sequences without multiple sequence alignment Author(s): Chan, Cheong Xin; Bernard, Guillaume; Poirion, Olivier; et al. Source: Scientific Reports Volume: 4 Published: SEP 30 2014 Times Cited: 20 DOI: 10.1038/srep06504
