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Otyepka, Michal
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ResearcherID: A-5922-2008
URL: http://www.researcherid.com/rid/A-5922-2008
Subject: Biochemistry & Molecular Biology; Biophysics; Chemistry
Keywords: molecular dynamics, molecular mechanics, qm/mm, rna, p450, cdk2
My Institutions (more details)
Primary Institution:
Sub-org/Dept: Department of Physical Chemistry; Faculty of Science
Role:
Description:
My URLs: http://www.rcptm.com/about/page/michal-otyepka/
http://fch.upol.cz/katedra/otyepka/
 
 

This list contains papers that I have authored.

publication(s)  
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1.  Title: Functionalization of Graphene: Covalent and Non-Covalent Approaches, Derivatives and Applications
 Author(s): Georgakilas, Vasilios; Otyepka, Michal; Bourlinos, Athanasios B.; et al.
 Source: Chemical Reviews Volume: 112 Issue: 11 Pages: 6156-6214 Published: NOV 2012
 Times Cited: 1365
 DOI: 10.1021/cr3000412
added
27-Dec-12
2.  Title: CAVER: a new tool to explore routes from protein clefts, pockets and cavities
 Author(s): PETREK, M; OTYEPKA, M; BANAS, P; et al.
 Source: BMC BIOINFORMATICS Volume: 7 Published: JUN 22 2006
 Times Cited: 308
 DOI: 10.1186/1471-2105-7-316
added
12-Feb-08
3.  Title: Refinement of the Cornell et al. Nucleic Acids Force Field Based on Reference Quantum Chemical Calculations of Glycosidic Torsion Profiles
 Author(s): Zgarbova, Marie; Otyepka, Michal; Sponer, Jiri; et al.
 Source: Journal of Chemical Theory and Computation Volume: 7 Issue: 9 Pages: 2886-2902 Published: SEP 2011
 Times Cited: 225
 DOI: 10.1021/ct200162x
added
03-Nov-11
4.  Title: Graphene Fluoride: A Stable Stoichiometric Graphene Derivative and its Chemical Conversion to Graphene
 Author(s): Zboril, R; Karlicky, F; Bourlinos, AB; et al.
 Source: Small Volume: 6 Issue: 24 Pages: 2885-2891 Published: 2010
 Times Cited: 179
 DOI: 10.1002/smll.201001401
added
31-Mar-11
5.  Title: Performance of Molecular Mechanics Force Fields for RNA Simulations: Stability of UUCG and GNRA Hairpins
 Author(s): Banas, P; Hollas, D; Zgarbova, M; et al.
 Source: Journal of Chemical Theory and Computation Volume: 6 Issue: 12 Pages: 3836-3849 Published: 2010
 Times Cited: 157
 DOI: 10.1021/ct100481h
added
01-Feb-11
6.  Title: Adsorption of Small Organic Molecules on Graphene
 Author(s): Lazar, Petr; Karlicky, Frantisek; Jurecka, Petr; et al.
 Source: Journal of the American Chemical Society Volume: 135 Issue: 16 Pages: 6372-6377 Published: APR 24 2013
 Times Cited: 146
 DOI: 10.1021/ja403162r
added
19-Jun-13
7.  Title: MOLE: A Voronoi diagram-based explorer of molecular channels, pores, and tunnels
 Author(s): PETREK, M; KOSINOVA, P; KOCA, J; et al.
 Source: STRUCTURE Volume: 15 Issue: 11 Pages: 1357-1363 Published: NOV 2007
 Times Cited: 136
 DOI: 10.1016/j.str.2007.10.007
added
12-Feb-08
8.  Title: Halogenated Graphenes: Rapidly Growing Family of Graphene Derivatives
 Author(s): Karlicky, Frantisek; Datta, Kasibhatta Kumara Ramanatha; Otyepka, Michal; et al.
 Source: Acs Nano Volume: 7 Issue: 8 Pages: 6434-6464 Published: AUG 2013
 Times Cited: 130
 DOI: 10.1021/nn4024027
added
09-May-14
9.  Title: Redesigning dehalogenase access tunnels as a strategy for degrading an anthropogenic substrate
 Author(s): PAVLOVA, M; KLVANA, M; PROKOP, Z; et al.
 Source: Nature Chemical Biology Volume: 5 Issue: 10 Pages: 727-733 Published: 2009
 Times Cited: 120
 DOI: 10.1038/nchembio.205
added
02-Jun-10
10.  Title: Molecular Dynamics and Quantum Mechanics of RNA: Conformational and Chemical Change We Can Believe In
 Author(s): DITZLER, MA; OTYEPKA, M; SPONER, J; et al.
 Source: Accounts of Chemical Research Volume: 43 Issue: 1 Pages: 40-47 Published: 2010
 Times Cited: 110
 DOI: 10.1021/ar900093g
added
02-Jun-10
publication(s)  
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