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Edwards, Richard J
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ResearcherID: C-8755-2011
URL: http://www.researcherid.com/rid/C-8755-2011
Subject: Biochemistry & Molecular Biology; Environmental Sciences & Ecology; Evolutionary Biology; Genetics & Heredity; Life Sciences & Biomedicine - Other; Mathematical & Computational Biology
Keywords: bioinformatics; computational biology; molecular evolution; short linear motifs; protein-protein interactions; interactome networks
ORCID: http://orcid.org/0000-0002-3645-5539
My Institutions (more details)
Primary Institution:
Sub-org/Dept: School of Biotechnology and Biomolecular Sciences
Role:
Joint Affiliation:
Sub-org/Dept: Centre for Biological Sciences; Institute for Life Science
Role:
Past Institutions: Royal College of Surgeons in Ireland, RCSI; University College Dublin (UCD)
Description:
My URLs: http://www.southampton.ac.uk/~re1u06/
http://edwardslab.blogspot.co.uk/
www.babs.unsw.edu.au/staff_academic/dr-richard-edwards
 
 

This list contains papers that I have authored.

publication(s)  
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1.  Title: ELM-the database of eukaryotic linear motifs
 Author(s): Dinkel, Holger; Michael, Sushama; Weatheritt, Robert J.; et al.
 Source: Nucleic Acids Research Volume: 40 Issue: D1 Pages: D242-D251 Published: 2012
 Times Cited: 173
 DOI: 10.1093/nar/gkr1064
added
06-Jan-13
2.  Title: SLiMFinder: A Probabilistic Method for Identifying Over-Represented, Convergently Evolved, Short Linear Motifs in Proteins
 Author(s): Edwards, R. J.; Davey, N. E.; Shields, D. C.
 Source: Plos One Volume: 2 Issue: 10 Pages: 11 Published: 2007
 Times Cited: 79
 DOI: e967 10.1371/journal.pone.0000967
added
13-Oct-11
3.  Title: SLiMDisc: short, linear motif discovery, correcting for common evolutionary descent
 Author(s): Davey, N. E.; Shields, D. C.; Edwards, R. J.
 Source: Nucleic Acids Research Volume: 34 Issue: 12 Pages: 3546-3554 Published: 2006
 Times Cited: 59
 DOI: 10.1093/nar/gkl486
added
13-Oct-11
4.  Title: Bioinformatic discovery of novel bioactive peptides
 Author(s): Edwards, R. J.; Moran, N.; Devocelle, M.; et al.
 Source: Nature Chemical Biology Volume: 3 Issue: 2 Pages: 108-112 Published: 2007
 Times Cited: 58
 DOI: 10.1038/nchembio854
added
13-Oct-11
5.  Title: SLiMSearch 2.0: biological context for short linear motifs in proteins
 Author(s): Davey, Norman E.; Haslam, Niall J.; Shields, Denis C.; et al.
 Source: Nucleic Acids Research Volume: 39 Pages: W56-W60 Published: 2011
 Times Cited: 36
 DOI: 10.1093/nar/gkr402
added
13-Oct-11
6.  Title: Masking residues using context-specific evolutionary conservation significantly improves short linear motif discovery
 Author(s): Davey, N. E.; Shields, D. C.; Edwards, R. J.
 Source: Bioinformatics Volume: 25 Issue: 4 Pages: 443-450 Published: 2009
 Times Cited: 35
 DOI: 10.1093/bioinformatics/btn664
added
13-Oct-11
7.  Title: CompariMotif: quick and easy comparisons of sequence motifs
 Author(s): Edwards, R. J.; Davey, N. E.; Shields, D. C.
 Source: Bioinformatics Volume: 24 Issue: 10 Pages: 1307-1309 Published: 2008
 Times Cited: 33
 DOI: 10.1093/bioinformatics/btn105
added
13-Oct-11
8.  Title: The SLiMDisc server: short, linear motif discovery in proteins
 Author(s): Davey, N. E.; Edwards, R. J.; Shields, D. C.
 Source: Nucleic Acids Research Volume: 35 Pages: W455-W459 Published: 2007
 Times Cited: 33
 DOI: 10.1093/nar/gkm400
added
13-Oct-11
9.  Title: Correlation of probiotic Lactobacillus salivarius growth phase with its cell wall-associated proteorne
 Author(s): Kelly, P.; Maguire, P. B.; Bennett, M.; et al.
 Source: Fems Microbiology Letters Volume: 252 Issue: 1 Pages: 153-159 Published: 2005
 Times Cited: 32
 DOI: 10.1016/j.femsle.2005.08.051
added
13-Oct-11
10.  Title: SLiMFinder: a web server to find novel, significantly over-represented, short protein motifs
 Author(s): Davey, Norman E.; Haslam, Niall J.; Shields, Denis C.; et al.
 Source: Nucleic Acids Research Volume: 38 Pages: W534-W539 Published: 2010
 Times Cited: 30
 DOI: 10.1093/nar/gkq440
added
13-Oct-11
publication(s)  
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